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The nrgpackages paths below should be used when setting up a pipeline for processing in the CNDA. For processing outside the CNDA, they should be available in the paths /data/nil-bluearc/raichle/lin64_tools or /data/petsun43/data1/atlas.

Representative Targets
Target Image File Root
Scanner
Path to Image File
Subject Population
Notes
711-2B
Vision
/nrgpackages/atlas
6M + 6F young adults

711-2C
Vision
/nrgpackages/atlas
Combined Old and Young
np292 Dale MPRAGE Seq.
711-2F
Vision 1.5T
/nrgpackages/atlas
Combined Child/Kid/Adult
CNDA-LifeSpanII
711-2G

/nrgpackages/atlas
6YF+6YM+6OF+6OM
Gleek
711-2H
Sonata
/nrgpackages/atlas
12F+12M 7yo-18yo
Hershey
711-2K

/nrgpackages/atlas
12 selected 789yo children

711-2L

/nrgpackages/atlas
12 selected 789yo children + 12 selected np364 young adults

711-2O

/nrgpackages/atlas
np292 Old

711-2V
Allegra
/nrgpackages/atlas
Young Adult

ALLEGRA_O_111
Bay 2 Allegra
/nrgpackages/atlas
16O
(TR: 2300, TE 2.83, TI 900)
ALLEGRA_Y_111
Bay 2 Allegra
/nrgpackages/atlas
16Y
(TR: 2300, TE 2.83, TI 900)
ALLEGRA_YO_111
Bay2 Allegra
/nrgpackages/atlas
16O + 16Y
(TR: 2300, TE 2.83, TI 900)
CAPIIO
Bay 3 Trio 3T
/nrgpackages/atlas
7OF + 5OM
CNDA-CAPII. Gradient Unwarp applied (TR: 2400, TE: 3.16, TI:1000.0)
TRIO_Y_NDC
Bay 3 Trio 3T
/nrgpackages/atlas
6YF + 6YM (21-30)
Gradient Unwarp NOT applied (TR: 2400, TE: 3.12, TI:1000.0)
TRIO_KY_NDC
Trio 3T
/nrgpackages/atlas
6KF + 6KM (7-8) + 6KYF + 6YM (21-30)
Gradient Unwarp NOT applied (TR: 2400, TE: 3.12, TI:1000.0)
NP720_M_DC
Middle aged Trio 3T
/nrgpackages/atlas
8M + 15F (49 to 76 year olds)
NP720 study - Gradient Unwarp Applied - TR: 2400, TE: 3.08, TI: 1000
NP720_M_NDC
Middle aged Trio 3T
/nrgpackages/atlas
8M + 15F (49 to 76 year olds)
NP720 study - Gradient Unwarp NOT Applied - TR: 2400, TE: 3.08, TI: 1000
MSADEM_K_111
Childrens Trio 3T
/nrgpackages/atlas
9M + 7F (3 to 16 year olds)
MSADEM Study - Gradient Unwarp Applied - Tammie Benzinger (TR: 2000, TE: 2.95, TI: 1000)
MSADEM_Y_DC (Recreated on September 22, 2008)
CCIR Trio 3T
/nrgpackages/atlas
6M + 6F (23 to 57 year olds)
MSADEM Study - Gradient Unwarp Applied - Tammie Benzinger (TR: 2400, TE: 3.06, TI: 1000)
LSIIK
Bay3 Vision 1.5T
/nrgpackages/atlas
8 10-16F + 4 12-16M
CNDA-LifeSpanII (TR: 9.7 TE: 4.0 TI: 20.0)
LSIIO
Bay3 Vision 1.5T
/nrgpackages/atlas
8 60-84F + 4 61-84M
CNDA-LifeSpanII (TR: 9.7 TE: 4.0 TI: 20.0)
LSIIY
Bay3 Vision 1.5T
/nrgpackages/atlas
7 19-28F + 5 18-30M
CNDA-LifeSpanII (TR: 9.7 TE: 4.0 TI: 20.0)
LSIIC
Bay3 Vision 1.5T
/nrgpackages/atlas
36 Kid/Young/Old
CNDA-LifeSpanII (TR: 9.7 TE: 4.0 TI: 20.0)
CAP_CKY_111
Bay3 Vision 1.5T
/nrgpackages/atlas
8 9-10F + 8 9-10M + 8 21-30F + 8 23-27M
CNDA-LifeSpanII Combined Kid and Young - Schlaggar (TR: 9.7, TE: 4.0, TI: 20)
GENPIBO
Bay1 Sonata Gradient 1.5T
/nrgpackages/atlas
6 68-72F + 6 68-77M
CNDA-GenPIB. Gradient Unwarp Applied (TR: 2400, TE: 3.16 TI: 1000.0)
P44W_C_111

/nrgpackages/atlas


NP891_YO_NDC_111
Bay3 Trio 3T
/nrgpackages/atlas
Yound and Old: 7M+10F (60-85 year) 3F (23-35 year)
Gradient Unwarp Not applied (TR:2400, TE:3.10, TI:1000)
PDSIIBRAIN_111
Bay3 Trio 3T
/nrgpackages/atlas
44 MPRAGES from 24 8-11yo children (12m/12f; 12 depressed/12 healthy controls) selected from the PDSII study.
Gradient Unwarp Not applied (sagittal acquisition TR: 2400 ms TE: 3.16 ms TI: 1000 ms) - Contact Deanna Barch
TRIO_5yo_NDC
CCIR Trio 3T
/nrgpackages/atlas
14 MPRAGES from 12 4-6yo depressed children (6m/6f) selected from the CHADS study.
Gradient Unwarp Not applied (sagittal acquisition TR: 2400 ms TE: 3.16 ms TI: 1000 ms) - Contact Deanna Barch