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Description

  • This pipeline will check the experiment for acquisition parameters.
  • This pipeline is Schematron based and generates a ProtcolValidation assessor.
  • Once Added to a project, pipeline will be labelled ProtocolCheck.

Can be run on

  • Validate .xml can be run on any modality

Project Inputs

Name
Description
Allowed Values
Is this pipeline to be launched automatically while archiving
Select if pipeline should run automatically for every session that is archived.
Checked = Yes
Unchecked = No
Experiment Type
Select the type of experiments pipeline will be run on.
Select from the list of available values
Content attribute set within the validation catalog
Enter the name of the set to use from those available in the catalog.
alphanumeric or leave as DEFAULT
Notification options:
Select to whom and when pipeline should notifications.
Select from the options listed

Launch Inputs

Name
Description
Allowed Values
The following parameters have been set for the protocol validation pipeline.
catalog_content
Enter the name of the set to use from those available in the catalog.
alphanumeric
notify
Select to whom and when pipeline should notifications.
Select from the options listed
When the process is complete, an email will be
automatically sent to
Will display if Do Notify was selected when pipeline was added to the project.

NOTE: will not be completed if notify step above is changed to Do Not Notify.
N/A
Send additional confirmation emails to
Enter emails for other users that should be notified of successful completion.
email addresses

Outputs

The following will result from a successful completion of the pipeline:

  • If notification was requested, the user who launched the pipeline will receive an email from the XNAT Team with the wording:
    "Freesurfer processing completed for..."
  • Files will be created in the Assessors/Protocol Validation directory for the scan under the folder VALIDATION
  • On the Session Details page, a link to the Protocol Validation details page will display under the heading Assessments