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This pipeline it is labelled as: StdMorphometry

Description: Standard Morphometry Build - Average T1 images, Register to atlas space. Includes FSL FAST

Add screen
addStdM.jpg
Pipeline Input Parameters

Name

Description
CSV Value
Schema Link
xnat_id

XNAT MRSession ID

xnat:mrSessionData.ID
sessionId

Projects MRSession ID

xnat:mrSessionData.label
project

XNAT MRSession
Project

xnat:mrSessionData.proj
ect
mprs

The usable MPRAGE scans of the session.
Enter a comma separated list of scan
types that correspond to
MPRAGE scans for your project
MPRAGE

target

The path to the study representative target to
be used


grad_unwarp

Select 0 if Distortion Correction is not to be
applied and 1 if Distortion correction is
to be applied. This will depend on whether the
distortion correction was set to on or off while
acquisition and if the target has been created
by applying the distortion correction
0,1