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Description

This pipeline registers MR scans to the specified atlas. The pipeline stores the registered files at scan level.

Can be run on

RegisterMRToAtlas.xml runs on MR and PET-MR sessions containing T1.

Project Inputs

Name
Description
Allowed Values
Scan type(s) to be registered
Any T1s to be registered to the provided atlas
text(single item or comma-separated list)
Default atlas
Enter names of atlas to which T1 images will be registered.
Listing of available atlases here.
text (single name), eg. 711-2B

Launch Inputs

Name
Description
Allowed Values
Selected scans
Any T1s matching the scan type(s) provided in the project inputs
checked, unchecked
Registration atlas
Defaults to atlas provided in project inputs, but may be changed.
Listing of available atlases here.
text (single name), eg. 711-2B

Outputs

The following will result from a successful completion of the pipeline
  • The user who launched the pipeline will receive an email from the XNAT Team with the wording:
    CNDA update: session_label T1 Atlas registered image(s)available
  • Registered files found at the T1 scan level
    mrRegistrationIllus.png
    Screenshot of registered T1 directory.


Additional Information



References