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Description

Makes a copy of all DICOM files in the scan, converts them to the Nifti format, and saves the files alongside the DICOM files.

Can be run on

DicomToNifti.xml can run on all datatypes.

Project Inputs

Name
Description
Allowed Values
Launch Automatically
Indicate if the pipeline should be run on every
scan as soon as it is archived
Checked, Unchecked
Output file type
Select what type of file the pipeline should create
Checked, Unchecked

Launch Inputs

Name
Description
Allowed Values
Non-Secondary Scans
Indicate which scans should be included
Checked, Unchecked
Output file type
Select what type of file the pipeline should create
Checked, Unchecked
send additional confirmation
emails to
Indicate others who should receive a confirmation
of successful completion of pipeline
email addresses separated
by comma

Outputs

The following will result from a successful completion of the pipeline

  • The user who launched the pipeline will receive an email from the XNAT Team with the wording:
    "NIFTI files have been generated for..."
  • Multiple Nifti files are created during the process. They are found alongside the DICOM files in
    Directories labeled NIFTI.

    Screenshot of scan with Nifti files included.
    NiftiFiles.jpg


Additional Information



References